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In prepared remarks to a congressional subcommittee today, astronaut Scott Kelly described the medical problems he has experienced since returning from his 340 day mission on ISS.
Kelly claimed in these remarks that weightlessness caused permanent effects (which this news article decides to emphasize), but I think that might be an overstatement. None of the specific problems he experienced appear to be permanent ones, and in my interviews with Russian astronauts who stayed even longer on Mir they noted no permanent effects. One did say however that the recovery time tended to match the mission time, so that if you spent a year in space it took a year to completely recover. Kelly has only been back about three months, so his recovery is certainly not over yet.
Update: Kelly’s remarks were part of a hearing promoting legislation that would give astronauts lifetime medical coverage from the government. Thus, there is a bit of lobbying going on here.