NASA’s arsenic biology discovery slammed

The uncertainty of science! A microbiologist is slamming last week’s NASA discovery that claimed a microbe had incorporated arsenic instead of phosphorus as part of its DNA. Key quote:

In an interview Monday, Redfield said the methods used by the researchers were so crude that any arsenic they detected was likely from contamination. There is no indication that the researchers purified the DNA to remove arsenic that might have been sticking to the outside of the DNA or the gel the DNA was embedded in, she added. Normally, purifying the DNA is a standard step, Redfield said: “It’s a kit, it costs $2, it takes 10 minutes.” She also questioned why the researchers analyzed the DNA while it was still in the gel, making the results more difficult to interpret: “No molecular biologist would ever do that.”

Killing bats to save them!

In a wonderful example of government stupidity, environmental officials in Wisconsin want to try to “exclude” bats from caves in order to prevent the spread of white nose syndrome.

Some quick background: White nose syndrome appeared in upstate New York about four years ago, killing about 90 percent of the bats affected. It has since spread down the east coast following bat migration patterns as they travel during the summer months. (While human activity might spread the syndrome as well, the evidence all points to the bats as the primary vector.) A newly discovered fungus that is seen on all affected bats, for which the syndrome is named, is the prime suspect for killing them, as it disturbs them during hibernation, causing them to wake more frequently, burn up their reserves,and thus starve to death.

Wisconsin officials, in their infinte wisdom, have decide that the way they will save the bats of their state will be to declare the fungus an invasive specie. They will then be empowered to do anything they can to prevent its spread. And how will they do this? By preventing bats from entering caves and bringing the fungus with them.

Let me say that again: Wisconsin environment officials want to “exclude bats from caves” in order to save them. The result of course will be a biological genocide, since without access to caves during the cold hibernation period the bats will surely die.

If you don’t believe me, see this press release. To quote:

The third proposed rule adds provisions to NR 40.04 and 40.07 relating to early detection and prevention of the spread of the disease due to human activities, including the decontamination of clothes and equipment that have been used in mines or caves, and limited access of bats or people to caves or mines. [emphasis mine]

If you still don’t believe me, read the state’s actual proposed management plan [pdf]. To quote page 5:

Under the proposed rules, the department may ask any person who owns, controls, or manages property here a cave or mine may be present to install and properly maintain physical barriers to limit access to the cave or mine by either individuals or bats, in accordance with a plan approved by the department. The department is seeking funding to assist with the installation of barriers, and therefore cost to those parties who install such barriers should be negligible. Additionally, commercial caves will have the option to exclude bats from their cave(s) with the help of the department, allowing them to remain open for tourism, and resulting in no loss of tourism dollars. [emphasis mine]

Moreover, this plan will give these officials the power to enter private property without the landowners’ permission.

Cavers have been trying to explain to the Wisconsin officials that this entire approach is madness. So far, these pleas have had very little effect. You can see their efforts here.

This whole story might be one of the best examples of why it is always bad idea to concentrate a lot of power in the hands of government. Better to spread the power around among a lot of private landowners, as then you also spread the stupidity around as well, and reduce the chances that the only approach taken is the worse approach.

The basic ingredients of life might exist in Titan’s atmosphere

Big news! In a simulation of the upper atmosphere of Titan at about 600 miles altitude, scientists have discovered the basic ingredients of life are quickly synthesized when exposed to the kind of hard radiation found there. Key quote from the press release, issued today at the 42nd meeting of the AAS Division for Planetary Sciences:

The molecules discovered include the five nucleotide bases used by life on Earth (cytosine, adenine, thymine, guanine and uracil) and the two smallest amino acids, glycine and alanine.

For those who don’t remember their high school biology, these nucleotides are the building blocks of DNA.

The abstract of the scientist’s work can be found here.

What the scientists did was recreate the basic ingredients of Titan’s upper atmosphere, comprised of nitrogen, methane and carbon monoxide. Cassini data has shown that within this atmosphere are very large molecules, as yet unidentified.

The scientists then bathed their recreation in the kind of intense radiation expected at that altitude, and amazingly produced the complex organic molecules that are basic to life. Moreover, the experiment was the first to produce these complex molecules without the presence of water, something that scientists have previously thought was required. These results suggest that in addition to forming in the oceans, life could also form in the upper atmospheres of planets.

This result also suggests strongly that it is incredibly easy to produce the basic building blocks of life, almost anywhere in the universe where organic molecules are present.

One third of so-called extinct species have turned up alive

Back from the dead! A new study has found that scientists are significantly over-estimating the number of animal extinctions, with approximately one third of the so-called “extinct” species turning up alive. This quote makes one wonder if politics have been a factor:

The mistakes cannot be blamed on primitive technology or old fashioned scientific methods. “Mammals missing in the 20th century were nearly three times as likely to be rediscovered as those that disappeared in the 19th century.”

Something is recycling the methane on Mars

Research results posted today [pdf] at the European Planetary Science Congress show that the methane in Mars’s atmosphere is seasonally variable and far more short-lived than predicted, disappearing in less than a year. Some process, therefore, must be both using it and replenishing it. On Earth, that’s almost always done by some form of life process. Key quote by one of the scientists, from the press release:

“Only small amounts of methane are present in the martian atmosphere, coming from very localised sources. We’ve looked at changes in concentrations of the gas and found that there are seasonal and also annual variations. The source of the methane could be geological activity or it could be biological ­ we can’t tell at this point.”

The image below shows the three regions (in yellow) where the methane is concentrated.

Mars methane locations

How blind cave fish find food

How blind cave fish find food. Key quote:

“Vibration Attraction Behavior” (or VAB) is the ability of fish to swim toward the source of a water disturbance in darkness. Postdoctoral associate Masato Yoshizawa measured this behavioral response in both wild caught and laboratory raised cave and surface-dwelling fish using a vibrating rod at different frequencies as a stimulus. Most cavefish displayed VAB and would swim toward the vibrating rod and poke at it, while few surface fish did.

Bat extinctions

An article today in Science describes how scientists now believe that white nose syndrome is probably going to cause the extinction of the little brown myotis bat. Key quote from the press release:

The researchers determined that there is a 99 percent chance of regional extinction of little brown myotis within the next 20 years if mortality and spread of the disease continue unabated. They note that several other bat species may also face a similar risk.

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